Selected publications

2025

Hu, Y., Horlbeck, M.A., Zhang, R., Ma, S., Shrestha, R., Kartha, V.K., Duarte, F.M., Hock, C., Savage, R.E., Labade, A., et al. (2025). Multiscale footprints reveal the organization of cis-regulatory elements. Nature.

2024

Labade, A.S., Chiang, Z.D., Comenho, C., Reginato, P.L., Payne, A.C., Earl, A.S., Shrestha, R., Duarte, F.M., Habibi, E., Zhang, R., et al. (2024). Expansion in situ genome sequencing links nuclear abnormalities to aberrant chromatin regulation. Science.

2021

Labade, A.S., Salvi, A., Kar, S., Karmodiya, K., and Sengupta, K. (2021). Nup93 and CTCF modulate spatiotemporal dynamics and function of the HOXA gene locus during differentiation. J. Cell Sci. 

2020

Payne, A.C., Chiang, Z.D., Reginato, P.L., Mangiameli, S.M., Murray, E.M., Yao, C.-C., Markoulaki, S., Earl, A.S., Labade, A.S., Jaenisch, R., et al. (2020). In situ genome sequencing resolves DNA sequence and structure in intact biological samples. Science.

Agbleke, A.A., Amitai, A., Buenrostro, J.D., Chakrabarti, A., Chu, L., Hansen, A.S., Koenig, K.M., Labade, A.S., Liu, S., Nozaki, T., et al. (2020). Advances in Chromatin and Chromosome Research: Perspectives from Multiple Fields. Mol. Cell.  (Equal authorship)

2016

Labade, A.S., Karmodiya, K., and Sengupta, K. (2016). HOXA repression is mediated by nucleoporin Nup93 assisted by its interactors Nup188 and Nup205. Epigenetics Chromatin 9, 54. 

2014

Malwal, S.R., Labade, A., Andhalkar, A.S., Sengupta, K., and Chakrapani, H. (2014). A highly selective sulfinate ester probe for thiol bioimaging. Chem. Commun.

News articles

First Person interview by Journal of Cell Science https://doi.org/10.1242/jcs.259605

Nature news: ‘Phenomenal’ tool sequences DNA and tracks proteins — without cracking cells open

New technique expands cells to sequence DNA and capture fine structural details

Spatial Technology Unveils Genome Structure Associated with Aging

Misshapen Cells Could Be Quietly Shutting Down Important Genes